transcriptome shotgun assembly database Search Results


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ncbi transcriptome shotgun assembly tsa database  (Biotechnology Information)
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( A ) Representative image of a soil-grown Venus flytrap clone (left), Venus flytrap leaf (center), and single trigger hair (right). Black arrowheads in the center picture indicate trigger hairs on leaf. ( B ) Scanning electron micrograph of a trigger hair. Cells of the lever (L), indentation zone (In) and podium (P) are indicated. Also seen are the digestive glands on the floor of the lobe. ( C ) Fold enrichment of protein-coding genes of >100 amino acids in length (black circles) in the trigger hair relative to the trap. FLYC1 , FLYC2 , and OSCA are shown in red, orange, and green, respectively. CPM, counts per million of mapped sequencing reads. ( D ) Average Fragments Per Kilobase of transcript per Million mapped reads (FPKM) for FLYC1 , FLYC2 , and OSCA in traps and trigger hairs. Dots of the same color indicate paired biological replicates. **FDR < 0.005. Figure 1—source data 1. Size estimates of two Arabidopsis (Col-0) samples compared to our Venus flytrap strain (CP01). Figure 1—source data 2. Summary of sequencing reads used to build the de novo <t>transcriptome</t> <t>(NCBI</t> Transcriptome Shotgun Assembly Sequence Database accession # GHJF00000000).
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( A ) Representative image of a soil-grown Venus flytrap clone (left), Venus flytrap leaf (center), and single trigger hair (right). Black arrowheads in the center picture indicate trigger hairs on leaf. ( B ) Scanning electron micrograph of a trigger hair. Cells of the lever (L), indentation zone (In) and podium (P) are indicated. Also seen are the digestive glands on the floor of the lobe. ( C ) Fold enrichment of protein-coding genes of >100 amino acids in length (black circles) in the trigger hair relative to the trap. FLYC1 , FLYC2 , and OSCA are shown in red, orange, and green, respectively. CPM, counts per million of mapped sequencing reads. ( D ) Average Fragments Per Kilobase of transcript per Million mapped reads (FPKM) for FLYC1 , FLYC2 , and OSCA in traps and trigger hairs. Dots of the same color indicate paired biological replicates. **FDR < 0.005. Figure 1—source data 1. Size estimates of two Arabidopsis (Col-0) samples compared to our Venus flytrap strain (CP01). Figure 1—source data 2. Summary of sequencing reads used to build the de novo <t>transcriptome</t> <t>(NCBI</t> Transcriptome Shotgun Assembly Sequence Database accession # GHJF00000000).
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ivis optical imaging platform  (Revvity)
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( A ) Representative image of a soil-grown Venus flytrap clone (left), Venus flytrap leaf (center), and single trigger hair (right). Black arrowheads in the center picture indicate trigger hairs on leaf. ( B ) Scanning electron micrograph of a trigger hair. Cells of the lever (L), indentation zone (In) and podium (P) are indicated. Also seen are the digestive glands on the floor of the lobe. ( C ) Fold enrichment of protein-coding genes of >100 amino acids in length (black circles) in the trigger hair relative to the trap. FLYC1 , FLYC2 , and OSCA are shown in red, orange, and green, respectively. CPM, counts per million of mapped sequencing reads. ( D ) Average Fragments Per Kilobase of transcript per Million mapped reads (FPKM) for FLYC1 , FLYC2 , and OSCA in traps and trigger hairs. Dots of the same color indicate paired biological replicates. **FDR < 0.005. Figure 1—source data 1. Size estimates of two Arabidopsis (Col-0) samples compared to our Venus flytrap strain (CP01). Figure 1—source data 2. Summary of sequencing reads used to build the de novo <t>transcriptome</t> <t>(NCBI</t> Transcriptome Shotgun Assembly Sequence Database accession # GHJF00000000).
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99
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( A ) Representative image of a soil-grown Venus flytrap clone (left), Venus flytrap leaf (center), and single trigger hair (right). Black arrowheads in the center picture indicate trigger hairs on leaf. ( B ) Scanning electron micrograph of a trigger hair. Cells of the lever (L), indentation zone (In) and podium (P) are indicated. Also seen are the digestive glands on the floor of the lobe. ( C ) Fold enrichment of protein-coding genes of >100 amino acids in length (black circles) in the trigger hair relative to the trap. FLYC1 , FLYC2 , and OSCA are shown in red, orange, and green, respectively. CPM, counts per million of mapped sequencing reads. ( D ) Average Fragments Per Kilobase of transcript per Million mapped reads (FPKM) for FLYC1 , FLYC2 , and OSCA in traps and trigger hairs. Dots of the same color indicate paired biological replicates. **FDR < 0.005. Figure 1—source data 1. Size estimates of two Arabidopsis (Col-0) samples compared to our Venus flytrap strain (CP01). Figure 1—source data 2. Summary of sequencing reads used to build the de novo <t>transcriptome</t> <t>(NCBI</t> Transcriptome Shotgun Assembly Sequence Database accession # GHJF00000000).
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( A ) Representative image of a soil-grown Venus flytrap clone (left), Venus flytrap leaf (center), and single trigger hair (right). Black arrowheads in the center picture indicate trigger hairs on leaf. ( B ) Scanning electron micrograph of a trigger hair. Cells of the lever (L), indentation zone (In) and podium (P) are indicated. Also seen are the digestive glands on the floor of the lobe. ( C ) Fold enrichment of protein-coding genes of >100 amino acids in length (black circles) in the trigger hair relative to the trap. FLYC1 , FLYC2 , and OSCA are shown in red, orange, and green, respectively. CPM, counts per million of mapped sequencing reads. ( D ) Average Fragments Per Kilobase of transcript per Million mapped reads (FPKM) for FLYC1 , FLYC2 , and OSCA in traps and trigger hairs. Dots of the same color indicate paired biological replicates. **FDR < 0.005. Figure 1—source data 1. Size estimates of two Arabidopsis (Col-0) samples compared to our Venus flytrap strain (CP01). Figure 1—source data 2. Summary of sequencing reads used to build the de novo <t>transcriptome</t> <t>(NCBI</t> Transcriptome Shotgun Assembly Sequence Database accession # GHJF00000000).
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bsshii  (New England Biolabs)
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( A ) Representative image of a soil-grown Venus flytrap clone (left), Venus flytrap leaf (center), and single trigger hair (right). Black arrowheads in the center picture indicate trigger hairs on leaf. ( B ) Scanning electron micrograph of a trigger hair. Cells of the lever (L), indentation zone (In) and podium (P) are indicated. Also seen are the digestive glands on the floor of the lobe. ( C ) Fold enrichment of protein-coding genes of >100 amino acids in length (black circles) in the trigger hair relative to the trap. FLYC1 , FLYC2 , and OSCA are shown in red, orange, and green, respectively. CPM, counts per million of mapped sequencing reads. ( D ) Average Fragments Per Kilobase of transcript per Million mapped reads (FPKM) for FLYC1 , FLYC2 , and OSCA in traps and trigger hairs. Dots of the same color indicate paired biological replicates. **FDR < 0.005. Figure 1—source data 1. Size estimates of two Arabidopsis (Col-0) samples compared to our Venus flytrap strain (CP01). Figure 1—source data 2. Summary of sequencing reads used to build the de novo <t>transcriptome</t> <t>(NCBI</t> Transcriptome Shotgun Assembly Sequence Database accession # GHJF00000000).
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( A ) Representative image of a soil-grown Venus flytrap clone (left), Venus flytrap leaf (center), and single trigger hair (right). Black arrowheads in the center picture indicate trigger hairs on leaf. ( B ) Scanning electron micrograph of a trigger hair. Cells of the lever (L), indentation zone (In) and podium (P) are indicated. Also seen are the digestive glands on the floor of the lobe. ( C ) Fold enrichment of protein-coding genes of >100 amino acids in length (black circles) in the trigger hair relative to the trap. FLYC1 , FLYC2 , and OSCA are shown in red, orange, and green, respectively. CPM, counts per million of mapped sequencing reads. ( D ) Average Fragments Per Kilobase of transcript per Million mapped reads (FPKM) for FLYC1 , FLYC2 , and OSCA in traps and trigger hairs. Dots of the same color indicate paired biological replicates. **FDR < 0.005. Figure 1—source data 1. Size estimates of two Arabidopsis (Col-0) samples compared to our Venus flytrap strain (CP01). Figure 1—source data 2. Summary of sequencing reads used to build the de novo <t>transcriptome</t> <t>(NCBI</t> Transcriptome Shotgun Assembly Sequence Database accession # GHJF00000000).
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( A ) Representative image of a soil-grown Venus flytrap clone (left), Venus flytrap leaf (center), and single trigger hair (right). Black arrowheads in the center picture indicate trigger hairs on leaf. ( B ) Scanning electron micrograph of a trigger hair. Cells of the lever (L), indentation zone (In) and podium (P) are indicated. Also seen are the digestive glands on the floor of the lobe. ( C ) Fold enrichment of protein-coding genes of >100 amino acids in length (black circles) in the trigger hair relative to the trap. FLYC1 , FLYC2 , and OSCA are shown in red, orange, and green, respectively. CPM, counts per million of mapped sequencing reads. ( D ) Average Fragments Per Kilobase of transcript per Million mapped reads (FPKM) for FLYC1 , FLYC2 , and OSCA in traps and trigger hairs. Dots of the same color indicate paired biological replicates. **FDR < 0.005. Figure 1—source data 1. Size estimates of two Arabidopsis (Col-0) samples compared to our Venus flytrap strain (CP01). Figure 1—source data 2. Summary of sequencing reads used to build the de novo <t>transcriptome</t> <t>(NCBI</t> Transcriptome Shotgun Assembly Sequence Database accession # GHJF00000000).
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Image Search Results


( A ) Representative image of a soil-grown Venus flytrap clone (left), Venus flytrap leaf (center), and single trigger hair (right). Black arrowheads in the center picture indicate trigger hairs on leaf. ( B ) Scanning electron micrograph of a trigger hair. Cells of the lever (L), indentation zone (In) and podium (P) are indicated. Also seen are the digestive glands on the floor of the lobe. ( C ) Fold enrichment of protein-coding genes of >100 amino acids in length (black circles) in the trigger hair relative to the trap. FLYC1 , FLYC2 , and OSCA are shown in red, orange, and green, respectively. CPM, counts per million of mapped sequencing reads. ( D ) Average Fragments Per Kilobase of transcript per Million mapped reads (FPKM) for FLYC1 , FLYC2 , and OSCA in traps and trigger hairs. Dots of the same color indicate paired biological replicates. **FDR < 0.005. Figure 1—source data 1. Size estimates of two Arabidopsis (Col-0) samples compared to our Venus flytrap strain (CP01). Figure 1—source data 2. Summary of sequencing reads used to build the de novo transcriptome (NCBI Transcriptome Shotgun Assembly Sequence Database accession # GHJF00000000).

Journal: eLife

Article Title: Stretch-activated ion channels identified in the touch-sensitive structures of carnivorous Droseraceae plants

doi: 10.7554/eLife.64250

Figure Lengend Snippet: ( A ) Representative image of a soil-grown Venus flytrap clone (left), Venus flytrap leaf (center), and single trigger hair (right). Black arrowheads in the center picture indicate trigger hairs on leaf. ( B ) Scanning electron micrograph of a trigger hair. Cells of the lever (L), indentation zone (In) and podium (P) are indicated. Also seen are the digestive glands on the floor of the lobe. ( C ) Fold enrichment of protein-coding genes of >100 amino acids in length (black circles) in the trigger hair relative to the trap. FLYC1 , FLYC2 , and OSCA are shown in red, orange, and green, respectively. CPM, counts per million of mapped sequencing reads. ( D ) Average Fragments Per Kilobase of transcript per Million mapped reads (FPKM) for FLYC1 , FLYC2 , and OSCA in traps and trigger hairs. Dots of the same color indicate paired biological replicates. **FDR < 0.005. Figure 1—source data 1. Size estimates of two Arabidopsis (Col-0) samples compared to our Venus flytrap strain (CP01). Figure 1—source data 2. Summary of sequencing reads used to build the de novo transcriptome (NCBI Transcriptome Shotgun Assembly Sequence Database accession # GHJF00000000).

Article Snippet: Our de novo Venus flytrap trap transcriptome is available through the National Center for Biotechnology Information (NCBI) Transcriptome Shotgun Assembly (TSA) database with accession number GHJF00000000.

Techniques: Sequencing